Appendix A - File Format Specifications

Created by Micha Sammeth, last modified on Apr 12, 2012

.BED Mapping Locations

.ERR Error Model

.FASTA/FASTQ Read Sequences

.GTF Gene Annotations

.LIB Library Fragments

.PAR Simulation Parameters

.PRO Transcriptome Profile

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2 - Download
Dec 13, 2018 • updated by Micha Sammeth • view change
5.3 Poly-dT Priming and DNAse Digestion (S.cerevisiae)
Nov 28, 2018 • updated by Micha Sammeth • view change
1.0.1 Release notes
Aug 27, 2018 • updated by Micha Sammeth • view change
1.0.2 Release notes
Aug 27, 2018 • updated by Micha Sammeth • view change
1.0.3 Release Notes
Aug 27, 2018 • updated by Micha Sammeth • view change
1.1 Release Notes
Aug 27, 2018 • updated by Micha Sammeth • view change
1.2 Release Notes
Aug 27, 2018 • updated by Micha Sammeth • view change
1.2.1 Release Notes
Aug 27, 2018 • updated by Micha Sammeth • view change
D.1 - General Questions
May 29, 2018 • commented by Micha Sammeth
D.1 - General Questions
May 25, 2018 • commented by Yuande Tan
3.2 - Starting the Flux Simulator
May 25, 2018 • commented by Yuande Tan
FPKM from PRO
Aug 07, 2017 • created by Deepak Grover
Stil an error while preparing sequences
Jun 22, 2017 • commented by Vitor Lima Coelho
I followed the paramater file and useage ,the error that java nullpointerexception occurred.
Jun 22, 2017 • commented by Vitor Lima Coelho
I followed the paramater file and useage ,the error that java nullpointerexception occurred.
Jun 22, 2017 • created by longyuqi

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