Flux Version
Mappings
Unfiltered GEM read mappings were employed, after converting them to BED format.
Annotation File
The quantifications are based on the Gencode (v12) reference annotation:
Parameter File
ANNOTATION_FILE gencode.v12.annotation.gtfREAD_DESCRIPTOR {ID}/{MATE}[1,2]ANNOTATION_MAPPING PAIRED |
Command Line
flux-capacitor -p <parameter_file> -i <sample.bam> -o <output.gtf> |
Overview
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