GTEx runs
Flux Version
Flux-Capacitor v1.2.3 (Flux Library: 1.20)
Annotation File
(Broad version, check for stable URL or upload)
Parameter File
ANNOTATION_FILE gencode.v12.annotation.patched_contigs_sorted.gtf COUNT_ELEMENTS [SPLICE_JUNCTIONS, INTRONS] ANNOTATION_MAPPING AUTO
Command Line
flux-capacitor -p <parameter_file> -i <sample.bam> -o <output.gtf>
Overview
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