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Parameter
## File locations
REF_FILE_NAME /Users/micha/Desktop/TAIR9_GFF3_genes.gtf
## Expression
NB_MOLECULES 5000000
TSS_MEAN 100
POLYA_SCALE 200
POLYA_SHAPE 1.5## Library Preparation
## Fragmentation
FRAG_SUBSTRATE DNA
FRAG_METHOD NB
FRAG_NB_LAMBDA 600
FRAG_NB_M 5
## RT parameters
RTRANSCRIPTION YES
RT_PRIMER PDT
RT_LOSSLESS YES
RT_MIN 400
RT_MAX 2600
## PCR / Filterint
PCR_DISTRIBUTION none
GC_MEAN NaN
FILTERING NO
# Sequencing
READ_NUMBER 2000000
READ_LENGTH 100
PAIRED_END YES
5,000,000 |
TSS_MEAN | 100 |
POLYA_SCALE | 200 |
POLYA_SHAPE | 1.5 |
FRAG_SUBSTRATE | DNA |
FRAG_METHOD | NB |
FRAG_NB_LAMBDA | 600 |
FRAG_NB_M | 5 |
RTRANSCRIPTION | YES |
RT_PRIMER | PDT |
RT_LOSSLESS | YES |
RT_MIN | 400 |
RT_MAX | 2,600 |
PCR_ROUNDS | 13 |
FILTERING | NO |
READ_NUMBER | 2,000,000 |
READ_LENGTH | 100 |
PAIRED_END | YES |