Questions about the Simulator and that are not covered by any of the other forums. Also technical questions concerning hard- and software handling belong here, however, consider filing a report in the tracking system instead when describing program errors.
Hi! I am running flux simulator recently both with and without error model (76). After getting the RNA-seq reads, I map them by Tophat2 and assemble them into transcripts by both Cufflinks and StringTie. However, it get more true positives using the RNA-seq with error than that using RNA-seq without error model. Could you tell me why?
flux-simulator: command not found
I believe that based on our email exchange the problem is now solved.