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Hi all,
Hopefully this is the correct place to ask this question.
I'm looking to use flux-capacitor to reference the Geuvadis dataset against gencodeV18.gtf. I want to keep the methodology exactly the same as was done in the original mapping, changing only the size of the .bam files.
So far, I have:
- Downloaded all .bam files for CEU population from ArrayExpress
- Sliced bam files for particular genomic locations using samtools.
- Sorted and indexed bam files.
- Downloaded gencodev18.gtf