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Hi all,

Hopefully this is the correct place to ask this question.

I'm looking to use flux-capacitor to reference the Geuvadis dataset against gencodeV18.gtf. I want to keep the methodology exactly the same as was done in the original mapping, changing only the size of the .bam files.

So far, I have:

  • Downloaded all .bam files for CEU population from ArrayExpress
  • Sliced bam files for particular genomic locations using samtools.
  • Sorted and indexed bam files.
  • Downloaded gencodev18.gtf  
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