List of features that are quantified by the Flux, and the corresponding attributes that are provided in the ouput.
Transcripts
| transcript_id | gene_id / locus_id | nr. reads | length | RPKM |
|---|
Splice Junctions
| gene_id/locus_id | nr.reads |
|---|
Introns, so-called "all-intronic regions"
| gene_id | locus_id | nr. reads | fraction cov. |
|---|
In the diagram above, the red box marks the all-intronic intersection of the two displayed introns. Read coverage of this region is expressed by the fraction of the intron that is covered by reads 10-bin resolution as a default). Intron parts outside of the red box are not considered for quantifying this feature, under the hypothesis that reads falling there could be assigned to the superimposed alternative exon boundaries.
Overview
Content Tools