## File locations
REF_FILE_NAME /Users/micha/Desktop/TAIR9_GFF3_genes.gtf

## Expression
NB_MOLECULES 5000000
TSS_MEAN          100
POLYA_SCALE 200
POLYA_SHAPE 1.5## Library Preparation
## Fragmentation
FRAG_SUBSTRATE DNA
FRAG_METHOD NB
FRAG_NB_LAMBDA 600
FRAG_NB_M 5

## RT parameters
RTRANSCRIPTION YES
RT_PRIMER PDT
RT_LOSSLESS YES
RT_MIN 400
RT_MAX 2600

## PCR / Filterint
PCR_DISTRIBUTION none
GC_MEAN NaN
FILTERING NO

# Sequencing
READ_NUMBER 2000000
READ_LENGTH 100
PAIRED_END YES