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The Flux Simulator provides a wrapper script to launch the program from predominant shell interpreters of major platforms. |
shell (Linux/Unix) |
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| cmd (Windows) |
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When started without parameters, the Flux Simulator provides a list of parameters command line flags that can be provided when starting the program. |
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[INFO] I am the Flux Toolbox (v1.0-SNAPSHOT build 1), nice to meet you!
[ERROR]
[ERROR] No parameter file specified !
[ERROR]
[USAGE]
simulator -p <file> [-l] [-o] [-s] [-x]
[DESCRIPTION]
Flux Simulation Pipeline
[OPTIONS]
-p --parameter <file> specify parameter file (PAR file)
-l --library simulate library construction
-o --printParameters Print default parameters
-s --sequence simulate sequencing
-x --express simulate expression |
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As can be seen by the default output above, the Flux Simulator requires a parameter file to be specified by the command line flag " |
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$ flux-simulator -o
[INFO] I am the Flux Toolbox (v1.0-SNAPSHOT build 1), nice to meet you!
# GTF reference file
#
REF_FILE_NAME
# exponent of power-law underlying the expression profile
#
# number default: -0.6
EXPRESSION_K -0.6
#... |
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The remaining command line flags " |