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Start Command

The Flux Simulator provides a wrapper script to launch the program from predominant shell interpreters of major platforms.

shell

(Linux/Unix)

$ flux -t simulator

cmd

(Windows)

 C:\>flux.bat -t simulator

When started without parameters, the Flux Simulator provides a list of parameters that can be provided

[INFO] I am the Flux Toolbox (v1.0-SNAPSHOT build 1), nice to meet you!
[ERROR] 
[ERROR] No parameter file specified !
[ERROR] 
[USAGE]
 simulator -p <file> [-l] [-o] [-s] [-x] 
[DESCRIPTION]
 Flux Simulation Pipeline
[OPTIONS]
	-p --parameter       <file> specify parameter file (PAR file) 
	-l --library                simulate library construction     
	-o --printParameters        Print default parameters          
	-s --sequence               simulate sequencing               
	-x --express                simulate expression

Parameter

 

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