Hi, I've read your article published in 2015: Analysis of alternative splicing events in custom gene datasets by AStalavista, and I am confusing about the common AS event mentioned in article,
“0,1-2^” for exon skipping,
“1^,2^” for alternative donors,
“1-,2-” for alternative acceptors,
“'0,1^2-” for intron retention,
“'1-2^,3-4^” for mutually exclusive exons
Actually I've run AStalavista on LINUX and got gtf output, and I noticed that besides the example AS code, there were also some complex code like 0,1^2-3^4-; 1-3^4-5^6-,2- etc, I tried to group them into the common AS event above but a bit confusing,
for example “'0,1^2-” for intron retention, so does "0,1^2-3^4-" for two intron retention? also is a kind of intron retention?
there does have many other AS code in the output, so is it possible to group them into a common AS event above?
Looking forward to your reply:)