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Dear Micha:

I got a quick question while using Flux Simulator: in the .PAR file, I need to provide several files, but I am not quite sure how to get them. Currently I assume:

...

REF_FILE_NAME: GTF annotation file directly downloaded from Ensembl? 

PRO_FILE_NAME: results from Flux Capacitor?

...

GEN_DIR: a directory containing .fa files of chromosome considered (say, Chr1 and Chr2)? 

Thank you again for your kind help!