Versions Compared

Old Version 14

changes.mady.by.user Micha Sammeth

Saved on

compared with

New Version 15

changes.mady.by.user Micha Sammeth

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Section
Column
HTML
<object width="480" height="400"><param name="movie" value="http://www.scivee.tv/flash/embedCast.swf" /><param name="allowfullscreen" value="true" /><param name="allowscriptaccess" value="always" /><param name="flashvars" value="id=10013&type=4" /><param name="wmode" value="transparent" /><embed src="http://www.scivee.tv/flash/embedCast.swf" allowfullscreen="true" wmode="transparent" allowscriptaccess="always" width="480" height="400" flashvars="id=10013&type=4&start=10"></embed></object>
Column
Column

The basic problem addressed by the FLUX CAPACITOR.

The exonic structure of two spliceforms (labeled as "SF A" and "SF B") is shown, with aligned reads from by RNAseq methods (top) . Those reads mapped to the edges of a splicing graph (bottom) represent a signal, measured as the FLUX - the relative coverage along an exonic stretch. Where transcripts overlap in exons, their respective flux is combined. Given the information from all edges in a locus, signal separation is achieved by decomposition across a flow network.

Section
Column

Image Removed

 

 

The video on the left shows an early report on our deconvolution strategy presented on the Genome Informatics conference 2009.

Column

Image Added