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Old Version 20

changes.mady.by.user Emilio Palumbo

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New Version 21

changes.mady.by.user Micha Sammeth

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Key

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KeyTypeDefault ValueDescription
SORT_IN_RAMBooleanfalsetrueSort reads in RAM memory, not on disk
READ_DESCRIPTORString{ID}

Expression how to parse the read IDs, or one of the following shorthand names:

Code Block
ANTISENSE, STRAND_MATE, BARNA, MATE2_SENSE, MATE1_SENSE, MATE_STRAND_CSHL, SENSE, SIMULATOR, PAIRED, SIMPLE, CASAVA18
NR_READS_MAPPEDInt-1

The number of reads mapped

ANNOTATION_MAPPINGString
SINGLE

Information from the read descriptor that will be used for annotation mapping:

Code Block
AUTO, PAIRED, STRANDED, SINGLE, COMBINED

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