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The profile file gives the following information in json format:=
All the information stored in the profile are derived from single transc= ript loci only. The read distribution information is given as an array= of bins of different lengths. Five bins are reported, with length of respe= ctively 250, 750, 1250, 1750, 2000 bases. Each transcript is assigned = to a bin depending on its length and the read distribution counters for tha= t transcript are incremented. The counters are stored for both sense and an= tisense directions. For each bin, the sum of the counters for both directio= ns is also stored. Mappings statistics are always computed while coverage s= tatistics are performed on demand.
An (not exhaustiv= e) example of how a profile stored in JSON format looks like is showed belo= w (the sense and asense arrays are not showed for space r= estrictions):
{ "masters": [ { "nfactor": NaN,=20 "asense": [],=20 "sums": 9747920,=20 "suma": 9747920,=20 "sense": [] },=20 { "nfactor": NaN,=20 "asense": [],=20 "sums": 264780,=20 "suma": 264780,=20 "sense": [] },=20 { "nfactor": NaN,=20 "asense": [],=20 "sums": 39660,=20 "suma": 39660,=20 "sense": [] },=20 { "nfactor": NaN,=20 "asense": [],=20 "sums": 73356,=20 "suma": 73356,=20 "sense": [] },=20 { "nfactor": NaN,=20 "asense": [],=20 "sums": 386060,=20 "suma": 386060,=20 "sense": [] } ],=20 "binMinTranscripts": 100,=20 "binMaxLengthDistance": 0.0,=20 "mappingStats": { "readsLoci": 0,=20 "singleTxLoci": 25097,=20 "loci": 0,=20 "readsTotal": 0,=20 "txsExp": 0,=20 "mappingsTotal": 0,=20 "mappingsMapped": 0,=20 "readLenMax": 80,=20 "lociUnsolved": 0,=20 "pairsWrongOrientation": 8072,=20 "mappingPairsNoTx": 0,=20 "mappingsWrongStrand": 1325031,=20 "mappingsSingleTxLociNoAnn": 577109,=20 "mappingPairsSingleTxLoci": 21023552,=20 "lociExp": 0,=20 "events": 0,=20 "mappingsSingleTxLoci": 9924127,=20 "txs": 0,=20 "readsSingleTxLoci": 24584539,=20 "eventsExp": 0,=20 "readLenMin": 72 },=20 "binMaxExprDistance": 0.0,=20 "coverageStats": { "coverage": { "length": 0,=20 "coverage": [] } },=20 "binMinReads": 10000 }