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Name Size Creator Creation Date Last Modification Date Labels Attached To
PNG File SeqContent_RT_MOTIF-default.png 47 kB Owen Dando Apr 16, 2014 16:57 Apr 16, 2014 17:16
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Page: Understanding behaviour of the RT_MOTIF simulation parameter
File fluxSim_Hsapien_defaultExp_76bpWithError.par 0.7 kB Rob Patro May 12, 2013 18:55 May 12, 2013 19:01
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Page: Strand Specific Library?
PNG File 5bias.png 149 kB bogdan mirauta Mar 22, 2013 19:05 Mar 22, 2013 19:08
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Page: 5'-peak in read coverage
File a_thaliana_flux.par 0.3 kB Mark Rogers Jan 23, 2013 17:02 Jan 23, 2013 17:03
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Page: Error simulating large number of reads
PNG File Flux_exon_junctions.png 26 kB Guest Jan 10, 2013 12:33 Jan 10, 2013 12:34
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Page: How to simulate reads not containing introns
File A11_A21.par 0.9 kB Guest Jan 10, 2013 12:32 Jan 10, 2013 12:34
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Page: How to simulate reads not containing introns
File t9_nebulization.par 0.6 kB Guest Jan 10, 2013 12:31 Jan 10, 2013 12:34
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Page: How to simulate reads not containing introns
PNG File YDR104C.png 6 kB Micha Sammeth Nov 26, 2012 16:27 Nov 26, 2012 16:27
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Page: Source of strong bias towards 5' ends
PNG File expression_k_0.png 3 kB Micha Sammeth Nov 26, 2012 15:44 Nov 26, 2012 15:44
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Page: 4.1.1 - Gene Expression Profile
JPEG File screenshot1.jpg 140 kB Istvan Albert Nov 21, 2012 20:16 Nov 21, 2012 20:16
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Page: Source of strong bias towards 5' ends
ZIP Archive simulator-fastq-example.tgz 3.90 MB Thasso Griebel Nov 17, 2012 13:13 Nov 17, 2012 13:18
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Page: Demo - Create Fastq file
PNG File logoJIRAPNG.png 10 kB Micha Sammeth Aug 28, 2012 18:12 Aug 28, 2012 18:12
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Page: Appendix C - JIRA Issue Tracker
PNG File logo_jira_blue.png 14 kB Thasso Griebel Jul 23, 2012 15:37 Jul 23, 2012 15:37
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Page: Appendix C - JIRA Issue Tracker
PNG File quality-dist.png 13 kB Thasso Griebel May 25, 2012 14:42 May 25, 2012 14:42
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Page: 4.5.4 - Error Models
File hg19_stranded.par 0.5 kB Micha Sammeth May 22, 2012 16:46 May 22, 2012 16:46
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Page: 5.2 Directional RNA-Seq Protocol (H.sapiens)
ZIP Archive hg19_RefSeq_fromUCSC100615_sorted_nuc.gtf.gz 4.83 MB Micha Sammeth May 22, 2012 16:45 May 22, 2012 16:45
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Page: 5.2 Directional RNA-Seq Protocol (H.sapiens)
File mm9_hydrolysis.par 0.6 kB Micha Sammeth May 22, 2012 15:29 May 22, 2012 15:29
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Page: 5.1 RNA Hydrolysis Protocol (M.musculus)
ZIP Archive mm9_refGene_fromUCSC110303_clean.gtf.gz 4.12 MB Micha Sammeth May 22, 2012 15:27 May 22, 2012 15:27
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Page: 5.1 RNA Hydrolysis Protocol (M.musculus)
File t9_nebulization.par 0.5 kB Micha Sammeth May 22, 2012 14:13 May 22, 2012 14:13
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Page: 5.4 Poly-dT Priming and Nebulization (A.thaliana)
ZIP Archive sacCer3_SGDGenes_fromUCSC120515_sorted.gtf.gz 257 kB Micha Sammeth May 22, 2012 13:24 May 22, 2012 13:24
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Page: 5.3 Poly-dT Priming and DNAse Digestion (S.cerevisiae)
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