The Flux Simulator provides a wrapper script to launch the program from predominant shell interpreters of major platforms.
shell
(Linux/Unix)
$ flux -t simulator
cmd
(Windows)
C:\>flux.bat -t simulator
When started without parameters, the Flux Simulator provides a list of parameters that can be provided
[INFO] I am the Flux Toolbox (v1.0-SNAPSHOT build 1), nice to meet you! [ERROR] [ERROR] No parameter file specified ! [ERROR] [USAGE] simulator -p <file> [-l] [-o] [-s] [-x] [DESCRIPTION] Flux Simulation Pipeline [OPTIONS] -p --parameter <file> specify parameter file (PAR file) -l --library simulate library construction -o --printParameters Print default parameters -s --sequence simulate sequencing -x --express simulate expression