Hi,

 

I'm annotating some filtered, sorted bam files with their index files and when I run:

flux-capacitor -p <parameter_file> -i <sample.bam> -o <output.gtf>

with:

ANNOTATION_FILE gencode.v12.annotation.gtf
READ_DESCRIPTOR {ID}/{MATE}[1,2]

ANNOTATION_MAPPING PAIRED

I get "You cannot specify a READ_Descriptor for BAM files".

I see this has been raised and apparently resolved in 

It still seems to occur. I'm using Win 7 OS 64bit - flux-capacitor-1.5.2.

 

Any prompt help will be great!

Thanks.