The Flux Simulator provides a wrapper script to launch the program from predominant shell interpreters of major platforms. |
shell (Linux/Unix) |
| cmd (Windows) |
|
When started without parameters, the Flux Simulator provides a list of command line flags that can be provided when starting the program. |
[INFO] I am the Flux Toolbox (v1.0-SNAPSHOT build 1), nice to meet you! [ERROR] [ERROR] No parameter file specified ! [ERROR] [USAGE] simulator -p <file> [-l] [-o] [-s] [-x] [DESCRIPTION] Flux Simulation Pipeline [OPTIONS] -p --parameter <file> specify parameter file (PAR file) -l --library simulate library construction -o --printParameters Print default parameters -s --sequence simulate sequencing -x --express simulate expression |
As can be seen by the default output above, the Flux Simulator requires a parameter file to be specified by the command line flag " |
$ flux-simulator -o [INFO] I am the Flux Toolbox (v1.0-SNAPSHOT build 1), nice to meet you! # GTF reference file # REF_FILE_NAME # exponent of power-law underlying the expression profile # # number default: -0.6 EXPRESSION_K -0.6 #... |
The remaining command line flags " |