Hi, I've read your article published in 2015: Analysis of alternative splicing events in custom gene datasets by AStalavista, and I am confusing about the common AS event mentioned in article,
“0,1-2^” for exon skipping,
“1^,2^” for alternative donors,
“1-,2-” for alternative acceptors,
“'0,1^2-” for intron retention,
“'1-2^,3-4^” for mutually exclusive exons
Actually I've run AStalavista on LINUX and got gtf output, and I noticed that besides the example AS code, there were also some complex code like 0,1^2-3^4-; 1-3^4-5^6-,2- etc, I tried to group them to the common AS event above but a bit confusing,
for example “'0,1^2-” for intron retention, so does "0,1^2-3^4-" for two intron retention, can be also regarded as kind of intron retention?
there does have many other AS code in the output, so is it possible to group them into a common AS event above?
Looking forward to your reply:)
Best,
koala
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