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Flux Version
Read Mappings
Unfiltered GEM read mappings were employed, after converting them to BED format.
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flux-capacitor -p <parameter_file> -i <sample.bam> -o <output.gtf> |
Pipeline
To speed up computation of the big dataset, the JIP pipeline system has been employed. All datasets were quantified in parallel, splitting each dataset on a per-chromosome base.
Overview
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