Versions Compared

Old Version 1

changes.mady.by.user Micha Sammeth

Saved on

compared with

New Version 2

changes.mady.by.user Micha Sammeth

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

For time efficiency, the positions of all genetic variants are loaded into the computer's memory (RAM), so it is to be ensured that enough memory is provided to the Java Virtual Machine. As an orientation, the variants from the 1000 Genomes project phase 1 and phase 2 comprise just for the  just for chr22 occupy 6.4 Gb of disk and require ~1.5Gb for running splice site scoring.

 

 

Code Block
[ERROR] Splice site scoring requires the genomic sequence, provide a value for parameter 'CHR_SEQ' in the parameter file, or via the command line flags -c or --chr!

...