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Definition: an AS event is a variation of (splice) sites between common sites, or the respective transcript ends. An AS event contains at least one alternative splice site, i.e. a splice site that is transcribed by multiple transcripts but not used by all of them. |
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Default settings for AStalavisat process exclusively internal AS events (ASI). In order to activate other event types, use the command flag --ev, e.g. the command line .... -ev [ASI,ASE]...will retrieve the internal and external AS events from the annotation. |
AS Subtype: AS Internal (ASI) Event
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Example: the well known traditional patterns of simple AS events are all internal, but there are also more complex examples patterns of internal AS events.
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AS Subtype: AS External (ASE) Event
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Example: the most frequently observed external AS events event patterns are
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Additional Splicing (DSP) Event
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Example: commonly observed DSP events areevent patterns
Variable Sites (VST) Event
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Example: VST events are picking up any variation between transcript structures, as for instance the following patterns
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