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Name	Long	Short	Value	Since	Description
DIMENSION	--dimension	-k	Integer	0.0	Dimension of the AS events to be extracted, values < 2 stand for 'complete' events <TM>
GENOME	--genome	-g	File	0.0	Folder with genomic sequences, one per chromosome (.FASTA format)
GENEID_PARAM	--gparam		File		Name and path of a file with the GeneID models for splice sites

HELP		-h	Boolean	3.0	Help on usage, list of parameters and corresponding descriptions
INPUT	--input	-i	File	0.0	Input file with reference annotation (.GTF format)
OUTPUT	--output	-o	File\|stdout	0.0	Keyword 'stdout' for standard output, or a an abstract path to the GTF output file
VARIANTS	--vcf		File		Name and path of a file with the variant information (.VCF format)

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