Parameter Name | Variable | Default Value | Parameter Range | Description |
---|---|---|---|---|
NB_MOLECULES | 5,000,000 | >0 | number of expressed RNA molecules simulated | |
EXPRESSION_K | -0.6 | exponent of the expression power law ("Pareto coefficient") | ||
EXPRESSION_X0 | 9,500 | parameter of the exponential decay | ||
EXPRESSION_X1 | 9,5002 | parameter of the exponential decay |
Section |
---|
Input: reference annotation (REF_FILE), transcript filtering parameter (LOAD_CODING, LOAD_NONCODING), expression parameters (NB_MOLECULES, EXPRESSION_K, EXPRESSION_X0, EXPRESSION_X1) |
...