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Parameter

Name

Variable

Default

Value

Parameter

Range

Description
FRAG_UR_D0
 1>0minimum length of fragments produced by hydrolysis
FRAG_UR_DELTA
 NaN1geometry of the fragmentation process (1=linear, 2=surface-diameter, 3=volume-diameter, etc.); if not explicitly specified (NaN), the geometry of breakage depends logarithmically on the molecule length
FRAG_UR_ETA
 NaN1intensity of fragmentation, determining the number of breaks per unit length; if not explicitly specified (NaN),  is determined by the corresponding corresponding  value and an expectation of 200nt (or the mean filtered fragment size, if size selection is used) long fragments

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