Page History
...
| Nr | Name | Type | Description |
|---|---|---|---|
| 1 | chrom | String | The name of the chromosome (e.g. chr3, chrY, chr2_random) or scaffold (e.g. scaffold10671). |
| 2 | chromStart | Integer | The starting position of the feature in the chromosome or scaffold. The first base in a chromosome is numbered 0. |
| 3 | chromEnd | Integer | The ending position of the feature in the chromosome or scaffold. The chromEnd base is not included in the display of the feature. For example, the first 100 bases of a chromosome are defined as chromStart=0, chromEnd=100, and span the bases numbered 0-99. |
| 4 | name | String | Defines the name of the BED line. This label is displayed to the left of the BED line in the Genome Browser window when the track is open to full display mode or directly to the left of the item in pack mode. |
| 5 | score | Integer | Unused, set to '0' |
| 6 | strand | [+\-] | The absolute directionality of the read; '+' denotes the same directionality as the reference sequende, '-' denotes that the read sequence is a reverse-complement of the reference sequence. |
| 7 | thickStart | Integer | Unused, set to '.' |
| 8 | thickEnd | Integer | Unused, set to '.' |
| 9 | itemRgb | [0-9]+,[0-9]+,[0-9]+ | Unused, set to '0,0,0' |
| 10 | blockCount | Integer | Number of alignment blocks for the read. Usually 1, but 2 or more in the case of reads that split-map. |
| 11 | blockSizes | comma-separated list | A comma-separated list of the block sizes. The number of items in this list should correspond to blockCount. |
| 12 | blockStarts | comma-separated list | A comma-separated list of block starts. All of the blockStart positions should be calculated relative to chromStart. The number of items in this list should correspond to blockCount. |
Example
chr1 2082 2503 chr1:4847775-4887990W:NM_001159750:1:2668:917:1137:S/2 0 - 0 0 0,0,0 2 8,28 0,393
...
Overview
Content Tools