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I want to get Flux to simulate reads from different transcripts.= So I am trying to understand how Flux deal with this situation. For exampl= e, if a gene has two isoforms. And an exon is absent in one isoform but pre= sent in the other. Those information are reflected in annotation file (gtf = file). Therefore, how would Flux simulate reads which belong to that partic= ular exon. Also will Flux generated reads across exon-exon boundary, this i= s to say the junction reads.