## File locations REF_FILE_NAME TAIR9_GFF3_genes.gtf ## Expression NB_MOLECULES 5000000 TSS_MEAN 100 POLYA_SCALE 200 POLYA_SHAPE 1.5 ## Fragmentation FRAG_SUBSTRATE DNA FRAG_METHOD NB FRAG_NB_LAMBDA 600 FRAG_NB_M 5 ## RT parameters RTRANSCRIPTION YES RT_PRIMER PDT RT_LOSSLESS YES RT_MIN 400 RT_MAX 2600 ## PCR / Filtering PCR_DISTRIBUTION none GC_MEAN NaN FILTERING NO # Sequencing READ_NUMBER 2000000 READ_LENGTH 100 PAIRED_END YES