### File locations GEN_DIR ../Reference/TAIR10_genome/ REF_FILE_NAME ../Reference/TAIR10_cds_20110103_without_Isoforms_GeneFamily_SeqSimilarity_sorted_CDS.gtf LOAD_CODING YES LOAD_NONCODING NO ### Expression NB_MOLECULES 3000000 ### Transcript Modifications #TSS_MEAN 100 POLYA_SCALE NaN POLYA_SHAPE Nan ### Fragmentation FRAGMENTATION YES FRAG_SUBSTRATE DNA FRAG_METHOD NB #FRAG_NB_LAMBDA 900 #FRAG_NB_THOLD 0.1 #FRAG_NB_M 1.0 ### RT parameters RTRANSCRIPTION YES RT_PRIMER RH #RT_MIN 500 #RT_MAX 5500 ### PCR / Filtering FILTERING YES SIZE_DISTRIBUTION N(200,20) ### Amplification #PCR_DISTRIBUTION none ### Sequencing READ_NUMBER 3000000 READ_LENGTH 90 PAIRED_END YES FASTA YES #ERR_FILE 100